Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs17233176 chr16:89832751 G/C 0.000167 177 25.87 20.17 36.37 KM Plot
PCPG rs17233253 chr16:89828437 A/G 0.000179 176 25.87 20.17 36.37 KM Plot
PCPG rs17233385 chr16:89819427 T/C 0.000179 176 25.87 20.17 36.37 KM Plot
PCPG rs17233392 chr16:89819305 C/T 0.000179 176 25.87 20.17 36.37 KM Plot
PCPG rs17233441 chr16:89817998 C/G 0.000179 176 25.87 20.17 36.37 KM Plot
PCPG rs17233448 chr16:89816424 G/T 0.000179 176 25.87 20.17 36.37 KM Plot
PCPG rs17233455 chr16:89816407 A/G 0.000179 176 25.87 20.17 36.37 KM Plot
PCPG rs17233490 chr16:89815397 AAAC/A 0.000179 176 25.87 20.17 36.37 KM Plot
PCPG rs17233497 chr16:89815152 G/A 0 177 26.57 20.13 3.17 KM Plot
PCPG rs17233567 chr16:89813821 G/A 0.000179 176 25.87 20.17 36.37 KM Plot
PCPG rs17233664 chr16:89810628 C/T 0.000179 176 25.87 20.17 36.37 KM Plot
PCPG rs17233678 chr16:89809962 T/C 0.000179 176 25.87 20.17 36.37 KM Plot
PCPG rs17233868 chr16:89803629 C/T 0.000188 175 25.87 20.2 36.37 KM Plot
PCPG rs17264841 chr7:36170016 A/G 0.000401 178 14.37 24.7 25.6 KM Plot
PCPG rs17280181 chr16:71523514 C/T 0 177 24.52 29.02 3.17 KM Plot